| Pos. | Rider | Country | Time |
| 1 | 12 Thomas Lüthi | SWI | 39'15.891 |
| 2 | 21 Franco Morbidelli | ITA | +0.010 |
| 3 | 11 Sandro Cortese | GER | +0.530 |
| 4 | 7 Lorenzo Baldassarri | ITA | +3.081 |
| 5 | 30 Takaaki Nakagami | JAP | +3.815 |
| 6 | 94 Jonas Folger | GER | +11.087 |
| 7 | 3 Simone Corsi | ITA | +13.291 |
| 8 | 49 Axel Pons | SPA | +16.411 |
| 9 | 23 Marcel Schrotter | GER | +17.650 |
| 10 | 97 Xavi Vierge | SPA | +17.665 |
| 11 | 19 Xavier Simeon | BEL | +17.762 |
| 12 | 5 Johann Zarco | FRA | +17.796 |
| 13 | 2 Jesko Raffin | SWI | +31.575 |
| 14 | 57 Edgar Pons | SPA | +34.670 |
| 15 | 14 Ratthapark Wilairot | THA | +40.454 |
| 17 | 70 Robin Mulhauser | SWI | +1'34.470 |